nf-core/provenancereport
Generate reproducible Quarto reports together with an audit trail of inputs, checksums, software versions, runtime environments, and provenance metadata.
gxpprovenanceregulatory-reporting
Version history
What’s Changed
- First draft / skeleton of provenancereport by @atrigila in https://github.com/nf-core/provenancereport/pull/15
- User provided quarto input and container by @atrigila in https://github.com/nf-core/provenancereport/pull/16
- Remove vulnerable PR-comment artifact pattern by @mashehu in https://github.com/nf-core/provenancereport/pull/17
- Add more docs on custom notebook by @atrigila in https://github.com/nf-core/provenancereport/pull/18
- Fix nf-prov and metadata by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/19
- Add multiqc report by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/23
- Attach documentation to pipeline run by @delfiterradas in https://github.com/nf-core/provenancereport/pull/26
- Add checksums by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/27
- add quarto notebook to tower reports tab by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/29
- Modularize environment collection for multiqc by @atrigila in https://github.com/nf-core/provenancereport/pull/30
- Dynamically obtain container for report environment by @atrigila in https://github.com/nf-core/provenancereport/pull/32
- fix(quartonotebook): detect AWS Batch runtime by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/33
- Create a
test fullby @atrigila in https://github.com/nf-core/provenancereport/pull/38 - Add
manifest.diagramtonextflow.configby @ewels in https://github.com/nf-core/provenancereport/pull/39 - Switch to workflow outputs by @delfiterradas in https://github.com/nf-core/provenancereport/pull/22
- docs: update pipeline map and add MultiQC screenshots by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/34
- Remove params from main workflow and ensure strict syntax adherence by @delfiterradas in https://github.com/nf-core/provenancereport/pull/40
- Template merge by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/41
- Testing release by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/42
- Fix environment.yml for report environment conda testing by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/44
- Fix environment.yml for report environment conda testing by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/45
- Fix environment.yml for report environment conda testing by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/46
- Update docs with location of BCO and WRROC files by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/49
- Fix stage file module by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/50
- Switch fix-linting to the hardened nf-core/actions reusable workflow by @mashehu in https://github.com/nf-core/provenancereport/pull/54
- Apply reviewer recommendations by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/52
- Move seqeralabs/action-tower-launch to @v2 (v2.4.0) by @mashehu in https://github.com/nf-core/provenancereport/pull/55
- feat: capture notebook package versions by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/56
- test: stabilize notebook version snapshots by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/57
- Fix pr43 review comments by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/58
- Apply review pr43 by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/59
- Make release 1.0.0- #82 by @antoniasaracco in https://github.com/nf-core/provenancereport/pull/43
New Contributors
- @atrigila made their first contribution in https://github.com/nf-core/provenancereport/pull/15
- @mashehu made their first contribution in https://github.com/nf-core/provenancereport/pull/17
- @antoniasaracco made their first contribution in https://github.com/nf-core/provenancereport/pull/19
- @delfiterradas made their first contribution in https://github.com/nf-core/provenancereport/pull/26
- @ewels made their first contribution in https://github.com/nf-core/provenancereport/pull/39
Full Changelog: https://github.com/nf-core/provenancereport/commits/1.0.0